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Storage Management

Learn how to reduce storage while maintaing the results.

To reduce the storage of project, it is suggested to get rid of intermediate files, in particular FASTQ and SAM files.

Remove all FASTQ and SAM files generated by celseq2.

celseq2 --config-file /path/to/wonderful_CEL-Seq2_config.yaml \
    --experiment-table /path/to/wonderful_experiment_table.txt \
    --output-dir /path/to/result_dir \
    -j 10 clean_FQ_SAM

Alternatively, user can gzip FASTQ and convert SAM to BAM:

celseq2-slim --project-dir /path/to/result_dir --dryrun
celseq2-slim --project-dir /path/to/result_dir